PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00026186-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 305aa    MW: 34441.6 Da    PI: 9.6745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00026186-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.3e-1398148154
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +r++h ++Er+RR+++N+ +  Lr+l+P++   ++++ + a+i+  A+e++k L
  WALNUT_00026186-RA  98 QRMTHIAVERNRRKQMNEHLVVLRSLMPES---YAQRGDQASIVGGAIEFVKVL 148
                         79****************************...*****************9977 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1696162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-1196153No hitNo description
PROSITE profilePS5088814.88897148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-1198148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1398159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-8103154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MALEALSSNE LFNYIIYDTI SATPYSSHDS SETGVLLESV MMPRNQGGIL ENSSLMTQKR  60
HSGRSDVVQR RQLLAVQGRK KRRRKPRVCK NKEEAETQRM THIAVERNRR KQMNEHLVVL  120
RSLMPESYAQ RGDQASIVGG AIEFVKVLEH LLQSLEAQKL QRPQPGVVES GLNEDMTTTP  180
KFLKQQRPPF AQFFAYPQYT WSQIPNKYAS KTKAAIADIE VTLIETHASL RILSRRSPRQ  240
LSKLVAGFQT LCLSILHLNV TTMDPLVLYS ISAKVEEGCR LTSVDDIAGA VHHMLRIIED  300
EAALC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17884RKKRRRK
27885RKKRRRKP
37984KKRRRK
498109RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018549.11e-149PREDICTED: transcription factor bHLH71-like isoform X2
SwissprotQ56XR01e-76BH071_ARATH; Transcription factor bHLH71
TrEMBLU5GM641e-147U5GM64_POPTR; Uncharacterized protein
STRINGPOPTR_0003s09200.11e-147(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.14e-73beta HLH protein 71